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@mskcc

Memorial Sloan Kettering

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  1. vcf2maf vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    Perl 415 222

  2. facets facets Public

    Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

    R 158 71

  3. ngs-filters ngs-filters Public

    Filters for false-positive mutation calls in NGS

    R 34 21

  4. iCallSV iCallSV Public

    Forked from rhshah/iCallSV

    A Framework to call Structural Variants from NGS based datasets

    Python 3 1

  5. mutation-signatures mutation-signatures Public

    Create mutation signatures from MAF's, and decompose them into Stratton signatures

    R 60 30

Repositories

Showing 10 of 243 repositories
  • ridgeback Public

    Toil API

    mskcc/ridgeback’s past year of commit activity
    Python 1 Apache-2.0 2 38 5 Updated Mar 23, 2026
  • beagle Public

    Voyager Backend

    mskcc/beagle’s past year of commit activity
    Python 2 Apache-2.0 6 99 (2 issues need help) 20 Updated Mar 23, 2026
  • LimsRest Public

    the restful service used by the IGO LIMS

    mskcc/LimsRest’s past year of commit activity
    Java 2 2 5 5 Updated Mar 23, 2026
  • igo-lims-plugins Public

    Sapio LIMS customizations to workflows for IGO

    mskcc/igo-lims-plugins’s past year of commit activity
    Java 2 0 1 9 Updated Mar 22, 2026
  • mskcc/smile-dashboard’s past year of commit activity
    TypeScript 0 AGPL-3.0 10 0 1 Updated Mar 20, 2026
  • mskcc/ccs_cohort_utils’s past year of commit activity
    Python 0 1 0 0 Updated Mar 20, 2026
  • igo-sample-submission-node Public

    Sample Submission API written in node.js

    mskcc/igo-sample-submission-node’s past year of commit activity
    JavaScript 0 2 1 (1 issue needs help) 31 Updated Mar 20, 2026
  • igo-genomics Public
    mskcc/igo-genomics’s past year of commit activity
    Vue 1 0 3 0 Updated Mar 18, 2026
  • vcf2maf Public

    Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

    mskcc/vcf2maf’s past year of commit activity
    Perl 415 222 94 1 Updated Mar 13, 2026
  • igo-delivery Public

    Delivery email, symlinks and permissions for IGO projects

    mskcc/igo-delivery’s past year of commit activity
    Python 1 Apache-2.0 0 0 1 Updated Mar 5, 2026