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@hammerlab

Hammer Lab

We're a lab working to understand and improve the immune response to cancer

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  1. flowdec flowdec Public

    TensorFlow Deconvolution for Microscopy Data

    Jupyter Notebook 91 25

  2. cytokit cytokit Public

    Microscopy Image Cytometry Toolkit

    Jupyter Notebook 114 18

  3. ketrew ketrew Public

    Keep Track of Experimental Workflows

    OCaml 76 10

  4. survivalstan survivalstan Public

    Library of Stan Models for Survival Analysis

    Jupyter Notebook 123 22

  5. prohlatype prohlatype Public

    Probabilistic HLA typing

    OCaml 35 4

  6. pageant pageant Public

    Parallel Genomic Analysis Toolkit

    14 4

Repositories

Showing 10 of 136 repositories
  • melanoma-reanalysis Public

    Online Materials: Somatic Mutations, Neoepitope Homology and Inflammation in Melanomas Treated with CTLA-4 Blockade

    hammerlab/melanoma-reanalysis’s past year of commit activity
    4 7 0 0 Updated Mar 22, 2026
  • guacamole Public

    Spark-based variant calling, with experimental support for multi-sample somatic calling (including RNA) and local assembly

    hammerlab/guacamole’s past year of commit activity
    Scala 85 Apache-2.0 21 42 1 Updated Mar 22, 2026
  • SmartCount Public

    Repository for collaboration on Celldom computer vision solutions

    hammerlab/SmartCount’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 17 1 Updated Aug 2, 2024
  • ppx_deriving_cmdliner Public

    Ppx_deriving plugin for generating command line interfaces from types (Cmdliner.Term.t)

    hammerlab/ppx_deriving_cmdliner’s past year of commit activity
    OCaml 98 Apache-2.0 12 12 1 Updated Sep 12, 2023
  • vcf-annotate-polyphen Public

    A tool to annotate human VCF files with PolyPhen2 effect measures

    hammerlab/vcf-annotate-polyphen’s past year of commit activity
    Python 10 Apache-2.0 6 2 3 Updated Dec 26, 2022
  • flusso Public

    FCS (Flow Cytometry Standard) parser and utility

    hammerlab/flusso’s past year of commit activity
    JavaScript 2 Apache-2.0 0 3 7 Updated Dec 9, 2022
  • t-cell-relation-extraction Public

    Literature mining for T cell relations

    hammerlab/t-cell-relation-extraction’s past year of commit activity
    Jupyter Notebook 23 5 7 5 Updated Aug 5, 2022
  • cytokit Public

    Microscopy Image Cytometry Toolkit

    hammerlab/cytokit’s past year of commit activity
    Jupyter Notebook 114 Apache-2.0 18 11 (1 issue needs help) 4 Updated Jul 15, 2022
  • flowdec Public

    TensorFlow Deconvolution for Microscopy Data

    hammerlab/flowdec’s past year of commit activity
    Jupyter Notebook 91 Apache-2.0 25 9 2 Updated Apr 29, 2022
  • genspio Public

    Generate Shell Phrases In OCaml

    hammerlab/genspio’s past year of commit activity
    OCaml 47 Apache-2.0 3 16 0 Updated Dec 15, 2021
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