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    64 repositories

    • HiCT_JVM

      Public
      Interactive visualizer ad manual scaffolder of Hi-C contact maps. All-in-one Java-based implementation.
      visualizationjavagenome
      visualizationjavagenomegradleopenlayershdf5hi-citmoscaffoldinghdf5-format
      Java
      •
      MIT License
      •0•2•7•0•Updated Apr 5, 2026Apr 5, 2026

    • HiCT_Library

      Public
      Library for interaction with Hi-C contact maps in HDF5 format
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 3, 2026Apr 3, 2026

    • HiCT_WebUI

      Public
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Apr 3, 2026Apr 3, 2026

    • mwcsr

      Public
      An R package for solving maximum-weight connected subrgaph problem and it's variants
      rcplex
      rcplex
      C++
      •
      Other
      •4•7•1•2•Updated Mar 5, 2026Mar 5, 2026

    • metafx

      Public
      MetaFX – library for feature extraction from whole-genome metagenome sequencing data
      bioinformaticsmetagenomicsfeature-extraction
      bioinformaticsmetagenomicsfeature-extraction
      Shell
      •
      MIT License
      •1•16•0•0•Updated Feb 24, 2026Feb 24, 2026

    • HiCT_Utils

      Public
      Utilities for interaction with HiCT library and data format.
      Python
      •
      MIT License
      •0•0•1•0•Updated Feb 23, 2026Feb 23, 2026

    • HiCT_Server

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • GADMA

      Public
      Genetic Algorithm for Demographic Model Analysis
      Python
      •
      Other
      •16•54•12•1•Updated Feb 3, 2026Feb 3, 2026

    • gatom

      Public
      Finding an Active Metabolic Module in Atom Transition Network
      R
      •
      Other
      •4•8•1•0•Updated Dec 2, 2025Dec 2, 2025

    • virgo-solver

      Public
      Solver for SGMWCS and GMWCS problems
      Java
      •
      Other
      •1•3•0•0•Updated Oct 31, 2025Oct 31, 2025

    • LinSeed

      Public
      Linseed: LINear Subspace identification for gene Expresion Deconvolution
      R
      •
      MIT License
      •10•33•2•0•Updated Aug 22, 2025Aug 22, 2025

    • ITMO_FS

      Public
      Feature selection library in python
      machine-learningfeature-selection
      machine-learningfeature-selection
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•146•7•5•Updated Aug 3, 2025Aug 3, 2025

    • samovar

      Public
      Algorithms package for generating model metagenomes with specified properties
      metagenomicsartificial-data
      metagenomicsartificial-data
      Python
      •
      MIT License
      •1•8•0•1•Updated Jun 11, 2025Jun 11, 2025

    • ctlab.github.io

      Public
      HTML
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • parallel-rearrangements

      Public
      parallel rearrangements caller
      Python
      •
      MIT License
      •2•4•2•0•Updated Oct 6, 2024Oct 6, 2024

    • metafast

      Public
      Fast metagenome analysis toolkit
      Java
      •
      MIT License
      •10•27•0•1•Updated Sep 3, 2024Sep 3, 2024

    • HiCT

      Public
      Combines all HiCT-related repositories as submodules
      Dockerfile
      •
      MIT License
      •0•3•1•0•Updated Jun 26, 2024Jun 26, 2024

    • scNavigator

      Public
      Single Cell Navigator
      JavaScript
      •2•5•0•2•Updated May 15, 2024May 15, 2024

    • BandageNG

      Public
      a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
      C++
      •
      GNU General Public License v3.0
      •114•2•0•0•Updated May 12, 2024May 12, 2024

    • metacherchant

      Public
      bioinformaticsmetagenomics
      bioinformaticsmetagenomics
      Java
      •
      MIT License
      •9•19•2•2•Updated Jan 16, 2024Jan 16, 2024

    • evoguess-ai

      Public
      Component for finding decomposition sets and estimating hardness of SAT instances.
      Python
      •
      MIT License
      •0•4•0•0•Updated Jan 15, 2024Jan 15, 2024

    • true-dist-infer

      Public
      HTML
      •0•3•0•0•Updated Sep 15, 2023Sep 15, 2023

    • GScour

      Public
      Genome-wide detection of positive selection
      bioinformaticspositive-selection
      bioinformaticspositive-selection
      Python
      •0•9•0•0•Updated Jun 6, 2023Jun 6, 2023

    • evoguess

      Public
      Component EvoGuess v2.1 for finding decomposition sets and estimating hardness of SAT instances.
      Python
      •
      MIT License
      •1•2•0•0•Updated Jun 4, 2023Jun 4, 2023

    • metafx_old

      Public archive
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 23, 2023May 23, 2023

    • dadi_adjoint_state

      Public
      The adjoint-state method for demographic inference
      Python
      •0•0•0•0•Updated May 21, 2023May 21, 2023

    • SCNPrep

      Public
      R
      •4•0•0•0•Updated Feb 21, 2023Feb 21, 2023

    • itmo_parsat

      Public
      Probabilistic backdoor trees for SAT solving
      C++
      •0•1•0•0•Updated Dec 1, 2022Dec 1, 2022

    • scn-pipeline

      Public
      scNavigator processing pipeline for scRNA-seq data
      Python
      •
      MIT License
      •1•3•0•0•Updated Nov 24, 2022Nov 24, 2022

    • dqnroute

      Public
      Emulation system for routing algorithms, particularly for DQN routing
      Jupyter Notebook
      •9•0•0•2•Updated Aug 31, 2022Aug 31, 2022
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