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    • CAMPneu

      Public
      Comprehensive Analysis of Mycoplasma Pneumoniae
      Nextflow
      MIT License
      0100Updated Jul 25, 2025Jul 25, 2025
    • el_gato

      Public archive
      Python
      MIT License
      41000Updated Apr 16, 2025Apr 16, 2025
    • pima

      Public
      Plasmid and antimicrobial resistance pipeline
      Python
      11620Updated Dec 30, 2024Dec 30, 2024
    • Volume based Pima Docker
      Python
      0000Updated Nov 23, 2023Nov 23, 2023
    • Seperating the Docker Installation and codebase from the core pima codebase. This way the latest version is always created with the latest docker
      Python
      1300Updated Nov 13, 2023Nov 13, 2023
    • c19r-app

      Public
      R
      Other
      1000Updated May 8, 2023May 8, 2023
    • c19rdata

      Public
      R
      1020Updated Mar 17, 2023Mar 17, 2023
    • hope

      Public
      Assessment of homopolymer performance of ONT sequencing
      Rust
      0000Updated Jan 6, 2023Jan 6, 2023
    • pima_md

      Public
      This implementation of PIMA uses Markdown instead of tectonic. Operation is largely the same though the packages used slightly different.
      Python
      2000Updated Dec 28, 2022Dec 28, 2022
    • COVID19 risk planner R-Shiny application
      R
      Other
      214600Updated Aug 6, 2022Aug 6, 2022
    • Collection of scripts describing how Mycetomatis datasets were processed
      Perl
      Apache License 2.0
      0000Updated Jul 27, 2022Jul 27, 2022
    • R shiny examples for QBios Workshop May 2021
      4400Updated May 18, 2021May 18, 2021
    • CANDy, the Custom AmplicoN Database tool, allows users to create custom BLAST databases using amplicons created with in silico PCR
      Python
      Apache License 2.0
      1040Updated May 6, 2021May 6, 2021
    • Bootstrap frontend for shieldimmunity.org
      CSS
      0000Updated Mar 10, 2021Mar 10, 2021
    • Weitz Sheild Immunity dashboard components
      R
      2110Updated Mar 10, 2021Mar 10, 2021
    • Serverless API bridge
      Python
      MIT License
      1100Updated Jun 12, 2020Jun 12, 2020
    • Modeling the Role of ‘Shield Immunity’ in Reducing COVID-19 Epidemic Spread
      Jupyter Notebook
      Other
      7000Updated May 5, 2020May 5, 2020
    • Metapopulation AGe-structured Epidemiological (MAGE) model for COVID-19 in Georgia
      Jupyter Notebook
      MIT License
      5000Updated Apr 29, 2020Apr 29, 2020
    • Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Dis…
      Python
      Other
      1110Updated Mar 24, 2020Mar 24, 2020
    • tool for creating installers from conda packages
      Python
      Other
      178000Updated Feb 5, 2020Feb 5, 2020
    • A stringMLST-based approach to gene calling and annotation
      Python
      1000Updated Mar 29, 2018Mar 29, 2018
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